Publications

Mate S, Bürkle T, Kapsner LA, Toddenroth D, Kampf M, Sedlmayr M, Castellanos I, Prokosch HU, Kraus S.
A Method for the Graphical Modeling of Relative Temporal Constraints.
J Biomed Inform. 2019 Oct 17:103314. doi: 10.1016/j.jbi.2019.103314. [Epub ahead of print].
Vey J, Kapsner LA, Fuchs M, Unberath P, Veronesi G, Kunz Meik.
A Toolbox for Functional Analysis and the Systematic Identification of Diagnostic and Prognostic Gene Expression Signatures Combining Meta-Analysis and Machine Learning.
Cancers 2019, 11, 1606; doi:10.3390/cancers11101606.
Gruendner J, Schwachhofer T, Sippl P, Wolf N, Erpenbeck M, Gulden C, Kapsner LA, Zierk J, Mate S, Stürzl M, Croner R, Prokosch HU, Toddenroth D.
KETOS: Clinical decision support and machine learning as a service – A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services.
PLoS ONE 14(10): e0223010.
Öfelein M, Reichold M, Maier C, Prokosch HU.
Designing a Framework of Components to Support Patient Engagement in Research.
Stud Health Technol Inform. 2019;267:20-27.
Vengadeswaran A, Neuhaus P, Hegselmann S, Storf H, Kadioglu D.
Semantically annotated Metadata: Interconnecting Samply.MDR and MDM-Portal.
Stud Health Technol Inform. 2019;267:86-92.
Kapsner LA, Kampf MO, Seuchter SA, Kamdje-Wabo G, Gradinger T, Ganslandt T, Mate S, Guendner J, Kraska D, Prokosch HU.
Moving Towards an EHR Data Quality Framework: The MIRACUM Approach.
Stud Health Technol Inform. 2019;267:247-253.
Schneiderheinze H, Prokosch HU, Apel H, Bellut L, Wullich B, Trollmann R, Schüttler C.
Development and usability analysis of a multimedia eConsent solution.
Stud Health Technol Inform. 2019;267:297-303.
Gulden C, Kirchner M, Schüttler C, Hinderer M, Kampf M, Prokosch HUP, Toddenroth D.
Extractive summarization of clinical trial descriptions.
Int J Med Inform. 2019;129:114-121.
Bild R, Ganslandt T, Ihrig K, Jahns R, Merzweiler A, Schreiweis B , Stäubert S, Zenker S, Bialke M, Prasser F.
Erster Schritt: Im Rahmen der Medizininformatik-Initiative des Bundesforschungsministeriums ist eine elektronische Abbildung von Informationen aus Patienten-Einwilligungserklärungen entwickelt worden.
E-HEALTH-COM. 2019; 2_3:50-53.
Gruendner J, Prokosch HU, Schindler S, Lenz S, Binder H.
A Queue-Poll Extension and DataSHIELD: Standardised, Monitored, Indirect and Secure Access to Sensitive Data. 
Stud Health Technol Inform. 2019;258:115-119.
Gulden C, Landerer I, Nassirian A, Altun FB, Andrae J.
Extraction and Prevalence of Structured Data Elements in Free-Text Clinical Trial Eligibility Criteria.
Stud Health Technol Inform. 2019;258:226-230. PubMed PMID: 30942751.
Hasselblatt H, Andrae J, Tassoni A, Fitzer K, Bahls T, Prokosch HU, Boeker M.
Establishing an Interoperable Clinical Trial Information System Within MIRACUM.
Stud Health Technol Inform. 2019;258:216-220.
Kampf MO, Kraska D, Prokosch HU.
An Analysis of Erlangen University Hospital’s Billing Data on Utility-Based De-Identification.
Stud Health Technol Inform. 2019;258:70-74.
Sommer M, Kirchner M, Gulden C, Egloffstein S, Lux MP, Beckmann MW, Mackensen A, Prokosch HU.
Design and Implementation of a Single Source Multipurpose Hospital-Wide Clinical Trial Registry. 
Stud Health Technol Inform. 2019;258:164-168.
Unberath P, Knell C, Prokosch HU, Christoph J.
Developing New Analysis Functions for a Translational Research Platform: Extending the cBioPortal for Cancer Genomics.
Stud Health Technol Inform. 2019;258:46-50.
Schoenthaler M, Boeker M, Horki P
How to compete with Google and Co.: big data and artificial intelligence in stones
Curr Opin Urol. 2018 Dec 6. doi: 10.1097/MOU.0000000000000578.
Bietenbeck A, Boeker M, Schulz S
NPU, LOINC, and SNOMED CT: a comparison of terminologies for laboratory results reveals individual advantages and a lack of possibilities to encode interpretive comments
Journal of Laboratory Medicine, 2018; 42 (6): 267-275.
Ganslandt T, Neumaier M
Digital networks for laboratory data: potentials, barriers and current initiatives
CCLM;2018;ePub.
Lenz S, Zöller D, Hess M, Binder H.
Architectures for distributed privacy-preserving deep learning
Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 63. Jahrestagung der GMDS, Osnabrück, 02.-06.09.2018. Düsseldorf: German Medical Science GMS Publishing House; 2018. DocAbstr. 207, DOI: 10.3205/18gmds097.
Treppner M, Lenz S, Binder H, Zöller D.
Modeling Activity Tracker Data Using Deep Boltzmann Machines
Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-155.
Kadioglu D, Breil B, Knell C, Lablans M, Mate S, Schlue D, Serve H, Storf H,  Ückert F,  Wagner T, Weingardt P, Prokosch HU.
Samply.MDR – A Metadata Repository and Its Application in Various Research Networks
Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-50.
Gulden C, Mate S, Prokosch HU, Kraus S.
Investigating the Capabilities of FHIR Search for Clinical Trial Phenotyping
Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-3.
Prokosch HU, Acker T, Bernarding J, Binder H, Boeker M, Boerries M, Daumke P, Ganslandt T, Hesser J, Höning G, Neumaier M, Marquardt K, Renz H, Rothkötter HJ, Schade-Brittinger C, Schmücker P, Schüttler J, Sedlmayr M, Serve H, Sohrabi K, Storf H.
MIRACUM: Medical Informatics in Research and Care in University Medicine – A Large Data Sharing Network to Enhance Translational Research and Medical Care
Methods Inf Med 2018; 57(Open 1): e82– e91, DOI: 3414/ME17–02–0025.

Sedlmayr M, Prokosch HU.
Datenaustausch in der Forschung via OMOP/OHDSI
EHEALTHCOM 4/18, COMPLEX|Medizininformatik 34-37, Juni 2018.

Knaup P, M. Deserno TM, Prokosch HU, Sax U.
Implementation of a National Framework to Promote Health Data Sharing
CC-BY-NC-ND 4.0 · Yearb Med Inform, April 2018, DOI: 10.1055/s-0038-1641210.

Hinderer M, Boerries M, Boeker M, Neumaier M, Loubal FP, Acker T, Brunner M, Prokosch HU, Christoph J.
Implementing Pharmacogenomic Clinical Decision Support into German Hospitals.
Stud Health Technol Inform. 2018;247:870-874. Doi: 10.3233/978-1-61499-852-5-870.
Maier C, Lang L, Storf H, Vormstein P, Bieber R, Bernarding J, Herrmann T, Haverkamp C, Horki P, Laufer J, Berger F, Höning G, Fritsch HW, Schüttler J, Ganslandt T, Prokosch HU, Sedlmayr M.
Towards Implementation of OMOP in a German University Hospital Consortium
Appl Clin Inform. 2018 Jan;9(1):54-61. DOI: 10.1055/s-0037-1617452 . Epub 2018 Jan 24.
Haverkamp C, Ganslandt T, Horki P, Boeker M, Dörfler A, Schwab S, Berkefeld J, Pfeilschifter W, Niesen WD, Egger K, Kaps M, Brockmann MA, Neumaier-Probst E, Szabo K, Skalej M, Bien S, Best C, Prokosch HU, Urbach H
Regional Differences in Thrombectomy Rates: Secondary use of Billing Codes in the MIRACUM (Medical Informatics for Research and Care in University Medicine) Consortium
Clin Neuroradiol. 2018 Jan 8. DOI: 10.1007/s00062-017-0656-y . [Epub ahead of print] PubMed PMID: 29313057.
Christoph J, Knell C, Bosserhoff A, Naschberger E, Stürzl M, Rübner M, Seuss H, Ruh M, Prokosch HU, Sedlmayr B
Usability and Suitability of the Omics-Integrating Analysis Platform tranSMART for Translational Research and Education
Applied Clinical Informatics Vol. 8: Issue 4 2017:1173-1183. DOI: 10.4338/ACI-2017-05-RA-0085.
Hinderer M, Boeker M, Wagner SA, Lablans M, Newe S, Hülsemann JL, Neumaier M, Binder H, Renz H, Acker T, Prokosch HU, Sedlmayr M.
Integrating clinical decision support systems for pharmacogenomic testing into clinical routine – a scoping review of designs of user-system interactions in recent system development.
BMC Med Inform Decis Mak. 2017 Jun 6;17(1):81. DOI: 10.1186/s12911-017-0480-y.
Hinderer M, Boeker M, Wagner SA, Binder H, Ückert F, Hülsemann JL, Neumaier M, Schade-Brittinger C, Acker T, Prokosch HU, Sedlmayr B.
The experience of physicians in pharmacogenomic clinical decision support within eight German University Hospitals.
Pharmacogenomics 2017 Jun;18(8):773-785. Doi: 10.2217/pgs-2017-0027.
Hinderer M, Boerries M, Haller F, Wagner S, Sollfranke S, Acker T, Prokosch HU. Christoph J.
Supporting Molecular Tumor Boards in Molecular-guided Decision-making – the Current Status of Five German University Hospitals.
Stud Health Technol Inform. 2017;236:48-54. Doi: 10.3233/978-1-61499-759-7-48.
Christoph J, Knell C, Naschberger E, Stürzl M, Maier C, Prokosch HU, Sedlmayr M.
Two Years of tranSMART in a University Hospital for Translational Research and Education.
Stud Health Technol Inform. 2017;236:70-79.
Knell C, Sedlmayr M, Christoph J.
Developing Interactive Plug-ins for tranSMART Using the SmartR Framework: The Case of Survival Analysis.
Stud Health Technol Inform. 2017;236:375-382.
Prabhune, A, Stotzka, Gertz, M., Hesser, J.
Managing Provenance for Medical Datasets An Example Case for Documenting the Workflow for Image Processing.
Health Informatics, Porto, Feb. 2017.
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